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Modelling In Tumor Biology - 22 Downloads

Modelling in tumour biology part II: modelling cancer therapy

Southampton University Hospitals, UK

Introduction

Most current adjuvant therapy for solid tumours is unsatisfactory. Relapse and treatment failure rates for chemotherapy and radiotherapy are high, as is the morbidity from the toxicity of current treatment strategies. Although we hope for novel therapies, which will destroy established, recurrent and metastatic tumours, in clinical practice we must work with the agents and therapeutic tools which we already possess. We thus need to aim for less empiricism in treatment selection and for more scientific targeting of individual patients. Extensive, systematic experimentation on human subjects is rarely practical or ethical, and modelling offers a route to the development of new treatment strategies. In an earlier article, the role models play in improving our understanding of tumour biology was discussed. This article considers how modelling, from the molecular to the epidemiological setting, influences our understanding and application of cancer therapy.

Models govern the concepts we employ in cancer therapy. We are not able to visualize drug and target molecules directly, nor physicochemical and biochemical processes (which may occur in milliseconds), nor the direct action of radiotherapy on tissues. We are obliged in clinical practice to wait for days, weeks, months or often years to confirm or refute the evidence of treatment efficacy, or to model surrogate end points to measure treatment effects.

This dependence upon indirect evidence of therapeutic mechanisms and outcomes is both a strength and a weakness. Clear and simple models of treatment will offer insights into therapy as, for example, the representation of structure and function of the drug resistance mechanism. Conversely, overly simple models may fail to address the complexity of the causes of treatment failure and encourage unjustified faith in current treatment modalities.

Molecular and cell models are powerful tools for understanding the actions of cytotoxic drugs in cells. The modelling of drug, protein and enzyme structures and interactions has been greatly advanced by computers. Physical and electronic modelling allows dynamic two and three dimensional reconstructions of complex molecules and their interactions in response to binding drugs. Such models allow the precise design of novel agents to fit receptors and to block the functional components of enzymes. For example, the structure of DNA provides the basis for modelling the action of cytotoxic drugs such as the alkylating and intercalating agents.

Detailed models of cell ultrastructure and function also aid the development of new therapeutic strategies. These may be based, for example, on the disruption of cell cycle regulation, control of apoptosis and cell signalling pathways, on inhibition of tubulin polymerization (vinca alkaloids) or depolymerization (taxols) during formation of the mitotic spindle. We have also learned a great deal about the functional organization and interaction of molecular complexes within cells, for which the model of a factory production line now appears more appropriate than ever.

Models and cancer therapy

Treatment resistance in cells

The subtlety and complexity of cell homeostasis and self-regulation provides major challenges for the development of effective anti-cancer strategies. These mechanisms evolved in nature long before the advent of chemotherapy and, therefore, seem to be fundamental to cell homeostasis. They include the DNA repair mechanisms, cell detoxification mechanisms and drug resistance pumps. These mechanisms have recently been reviewed in detail.

DNA repair mechanisms endow considerable resilience upon the cell population before and during therapy. Evolutionarily conserved nuclear DNA-associated enzymes, such as the topoisomerases, undertake DNA housekeeping operations (e.g., repair of strand breaks) and the facilitation of chromosome cleavage and segregation (Figs 1 and 2). Cellular detoxification mechanisms include membrane bound efflux pumps and intracellular metabolic pathways. The accumulation and intracellular action of cytotoxic drugs in the target cell may be modulated by a number of molecular mechanisms which confer drug resistance, the multi drug resistance (MDR) phenotype.

Enzymatic systems have evolved within cells to metabolize unwanted molecules and toxins. These include glutathione-S-transferase and glutathione reductase, which neutralize injurious free radicals such as reactive oxygen and hydroxyl groups. These are generated within cells as a result of radiation and drug action, modulating the resistance of the cell to therapy. The membrane bound efflux pumps include the p170 glycoprotein (Pgp) system, the multispecific organic anion transporter (MOAT) and lung resistance protein (LRP). They provide an elegant model of the relationship between molecular structure and function (Figs 3–5). They provide an explanation for drug treatment failure and suggest means to circumvent drug resistance. The family

Fig. 1. This diagrammatic model illustrates the complex folding of DNA and the higher orders of structure within a condensed metaphase chromosome. Within this tightly coiled DNA and supporting histone protein matrix is collocated the topoisomerase II enzyme to prevent irreversible supercoiling and entanglement of DNA (Courtesy of Professor P. J. Smith, University, College of Wales, UK).
Fig. 1. This diagrammatic model illustrates the complex folding of DNA and the higher orders of structure within a condensed metaphase chromosome. Within this tightly coiled DNA and supporting histone protein matrix is collocated the topoisomerase II enzyme to prevent irreversible supercoiling and entanglement of DNA (Courtesy of Professor P. J. Smith, University, College of Wales, UK).
Fig. 2. This diagram demonstrates the action of topoisomerase II in forming a gate, or cleavable complex, through which tangled strands of DNA can pass. It illustrates how a complex molecular process and target for cytotoxic drug action can be clarified by a clear two dimensional model (Courtesy of Professor P. J. Smith, University, College of Wales, UK).
Fig. 2. This diagram demonstrates the action of topoisomerase II in forming a gate, or cleavable complex, through which tangled strands of DNA can pass. It illustrates how a complex molecular process and target for cytotoxic drug action can be clarified by a clear two dimensional model (Courtesy of Professor P. J. Smith, University, College of Wales, UK).
Fig. 3. Figures 3–5 illustrate how complex molecular data can be resolved by modelling techniques to provide an elegant insight into this important homeostatic system. The planar model in Figure 3 illustrates how a primary protein structure can be correlated with secondary structure and function and cellular localisation at the cell membrane in one diagram. The protein is the p170 glycoprotein. The transmembrane domains aggregate in three dimensions to form a pore complex through which alien molecules can be pumped. Sites of Adenosine TriPhosphate (ATP) binding are marked. Circled Ps represent phosphorylation sites. The sugar moieties (irregular lines) are bound to the outer portion of the molecule around amino acids 90–100. (Dr U. Germann, Cambridge, Mass., USA, reproduced by permission of Elsevier Science from the European Journal of Cancer, 1996, Vol 32A, No 6, p. 929).
Fig. 3. Figures 3–5 illustrate how complex molecular data can be resolved by modelling techniques to provide an elegant insight into this important homeostatic system. The planar model in Figure 3 illustrates how a primary protein structure can be correlated with secondary structure and function and cellular localisation at the cell membrane in one diagram. The protein is the p170 glycoprotein. The transmembrane domains aggregate in three dimensions to form a pore complex through which alien molecules can be pumped. Sites of Adenosine TriPhosphate (ATP) binding are marked. Circled Ps represent phosphorylation sites. The sugar moieties (irregular lines) are bound to the outer portion of the molecule around amino acids 90–100. (Dr U. Germann, Cambridge, Mass., USA, reproduced by permission of Elsevier Science from the European Journal of Cancer, 1996, Vol 32A, No 6, p. 929).